Sevilla took the lead in Valdebebas after an exciting start which saw Sevilla play better early on, but Real Madrid had a goal chalked off by VAR.
Julen Lopetegui's men took the lead from a set piece which Casemiro protested and got booked for.
Suso decided to take it short to Jesus Navas who then put the ball into the box, Rakitic then headed to Fernando who put Sevilla 0-1 up.
He took a touch inside the box and then beat Courtois with a low shot from close range.